Several different methods are currently used in genetic testing laboratories. The type of test will depend on the type of abnormality being measured. In general, three major types of genetic testing are available: cytogenetic, biochemical, and molecular.
Cytogenetic Testing.
Cytogenetics involves the examination of whole chromosomes for abnormalities. Chromosomes of a dividing human cell can be analyzed clearly under a microscope. White blood cells, specifically T lymphocytes, are the most readily accessible cells for cytogenetic analysis because they are easily collected from blood and are capable of rapid division in cell culture. Cells from tissues such as bone marrow (for leukemia), amniotic fluid (for prenatal diagnosis), and other tissue biopsies can also be cultured for cytogenetic analysis.
Following several days of cell culture, chromosomes are fixed, spread on microscope slides, and then stained. The staining methods for routine analysis allow each of the chromosomes to be individually identified. The distinct bands of each chromosome revealed by staining allow for analysis of chromosome structure.
Biochemical Testing.
The enormous numbers of biochemical reactions that routinely occur in cells require different types of proteins. Several classes of proteins such as enzymes, transporters, structural proteins, regulatory proteins, receptors, and hormones exist to fulfill multiple functions. A mutation in any type of protein can result in disease if the mutation results in failure of the protein to function correctly. (See Table 2.2 for types of protein alterations that may result in disease.)
2.4.3 Molecular Testing
For small DNA mutations, direct DNA testing may be the most effective method, particularly if the function of the protein is unknown and a biochemical test cannot be developed. A DNA test can be performed on any tissue sample and requires very small amounts of sample. Some genetic diseases can be caused by many different mutations, making molecular testing challenging. For example, more than 1,000 mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene can cause cystic fibrosis (CF).
It would be impractical to examine the entire sequence of the CFTR gene routinely to identify the causative mutation because the gene is quite large. However, since the majority of CF cases are caused by approximately 30 mutations, this smaller group of mutations is tested before more comprehensive testing is performed. |